IL_8AP4_018

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

8AP4|1|a|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_018 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.0963

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8AP4|1|a|U|702
8AP4|1|a|U|703
*
8AP4|1|a|G|728
8AP4|1|a|G|729
8AP4|1|a|A|730

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2