IL_8AP4_061

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8AP4|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_061 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0903

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8AP4|1|a|C|1686
8AP4|1|a|G|1687
8AP4|1|a|U|1688
8AP4|1|a|A|1689
8AP4|1|a|A|1690
8AP4|1|a|C|1691
*
8AP4|1|a|G|1696
8AP4|1|a|G|1697
8AP4|1|a|A|1698
8AP4|1|a|G|1699
8AP4|1|a|A|1700
8AP4|1|a|A|1701
8AP4|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2