IL_8AP4_104

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

8AP4|1|b|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_104 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.271

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8AP4|1|b|C|17
8AP4|1|b|G|18
*
8AP4|1|b|U|65
8AP4|1|b|A|66
8AP4|1|b|G|67

Current chains

Chain b

5S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA