IL_8AP4_111

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

8AP4|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AP4_111 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1125

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8AP4|1|a|G|1666
8AP4|1|a|G|1667
8AP4|1|a|A|1668
8AP4|1|a|A|1669
8AP4|1|a|C|1670
8AP4|1|a|U|1671
8AP4|1|a|A|1672
8AP4|1|a|G|1673
8AP4|1|a|G|1674
*
8AP4|1|a|C|1990
8AP4|1|a|U|1991
8AP4|1|a|G|1992
8AP4|1|a|U|1993
8AP4|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14