IL_8B6C_033

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8B6C|1|5|A|831, 8B6C|1|5|A|834, 8B6C|1|5|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B6C|1|5|A|726
8B6C|1|5|A|727
8B6C|1|5|G|728
8B6C|1|5|G|729
*
8B6C|1|5|C|827
8B6C|1|5|A|828
8B6C|1|5|G|829
8B6C|1|5|C|830
8B6C|1|5|A|831
8B6C|1|5|G|832
8B6C|1|5|C|833
8B6C|1|5|A|834
8B6C|1|5|G|835
8B6C|1|5|C|836
8B6C|1|5|U|837

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a