IL_8B6C_078

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8B6C|1|5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_078 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5113

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8B6C|1|5|G|1912
8B6C|1|5|U|1913
8B6C|1|5|G|1914
8B6C|1|5|G|1915
8B6C|1|5|C|1916
*
8B6C|1|5|G|1928
8B6C|1|5|A|1929
8B6C|1|5|A|1930
8B6C|1|5|U|1931
8B6C|1|5|C|1932

Current chains

Chain 5

28S rRNA

Nearby chains