IL_8B6C_098

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8B6C|1|5|G|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_098 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.1608

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

8B6C|1|5|C|2547
8B6C|1|5|G|2548
*
8B6C|1|5|C|2553
8B6C|1|5|G|2554
8B6C|1|5|G|2555

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

Protein transport protein Sec61 subunit alpha isoform 1

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22 (Fragment)

Chain X

Ribosomal_L23eN domain-containing protein