IL_8B6C_128

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

8B6C|1|5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B6C_128 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1716

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8B6C|1|5|G|4037
8B6C|1|5|A|4038
8B6C|1|5|PSU|4039
8B6C|1|5|C|4040
*
8B6C|1|5|G|4062
8B6C|1|5|A|4063
8B6C|1|5|C|4064

Current chains

Chain 5

28S rRNA

Nearby chains

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a-like