IL_8B6C_186
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8B6C|1|5|G|3571
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_186 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0708
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8B6C|1|5|G|2690
8B6C|1|5|G|2691
8B6C|1|5|A|2692
8B6C|1|5|A|2693
8B6C|1|5|G|2694
8B6C|1|5|U|2695
8B6C|1|5|C|2696
8B6C|1|5|G|2697
8B6C|1|5|G|2698
*
8B6C|1|5|C|3569
8B6C|1|5|U|3570
8B6C|1|5|G|3571
8B6C|1|5|U|3572
8B6C|1|5|C|3573
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- 60S ribosomal protein L23
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