IL_8B7Y_020

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCC*GGU

Length

7 nucleotides

Bulged bases

8B7Y|1|C|C|418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_020 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.1945

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8B7Y|1|C|G|416
8B7Y|1|C|G|417
8B7Y|1|C|C|418
8B7Y|1|C|C|419
*
8B7Y|1|C|G|424
8B7Y|1|C|G|425
8B7Y|1|C|U|426

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S4