IL_8B7Y_024

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_024 not in the Motif Atlas

Geometric match to IL_5J7L_024

Geometric discrepancy: 0.0969

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8B7Y|1|C|C|504
8B7Y|1|C|G|505
8B7Y|1|C|G|506
8B7Y|1|C|C|507
8B7Y|1|C|U|508
8B7Y|1|C|A|509
8B7Y|1|C|A|510
8B7Y|1|C|C|511
*
8B7Y|1|C|G|540
8B7Y|1|C|G|541

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S4

Chain q

30S ribosomal protein S12