IL_8B7Y_075

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2904

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8B7Y|1|I|C|274
8B7Y|1|I|C|275
8B7Y|1|I|U|276
8B7Y|1|I|G|277
8B7Y|1|I|A|278
8B7Y|1|I|A|279
8B7Y|1|I|U|280
8B7Y|1|I|C|281
*
8B7Y|1|I|G|359
8B7Y|1|I|U|360
8B7Y|1|I|G|361
8B7Y|1|I|A|362
8B7Y|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains