IL_8B7Y_106

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUG*CAUCA

Length

10 nucleotides

Bulged bases

8B7Y|1|I|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_106 not in the Motif Atlas

Homologous match to IL_5J7L_384

Geometric discrepancy: 0.3596

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8B7Y|1|I|U|1058
8B7Y|1|I|G|1059
8B7Y|1|I|U|1060
8B7Y|1|I|U|1061
8B7Y|1|I|G|1062
*
8B7Y|1|I|C|1076
8B7Y|1|I|A|1077
8B7Y|1|I|U|1078
8B7Y|1|I|C|1079
8B7Y|1|I|A|1080

Current chains

Chain I

23S ribosomal RNA

Nearby chains