IL_8B7Y_138
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8B7Y|1|I|A|1938, 8B7Y|1|I|U|1944, 8B7Y|1|I|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B7Y_138 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1377
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8B7Y|1|I|C|1934
8B7Y|1|I|G|1935
8B7Y|1|I|A|1936
8B7Y|1|I|A|1937
8B7Y|1|I|A|1938
8B7Y|1|I|5MU|1939
8B7Y|1|I|U|1940
8B7Y|1|I|C|1941
8B7Y|1|I|C|1942
8B7Y|1|I|U|1943
8B7Y|1|I|U|1944
8B7Y|1|I|G|1945
*
8B7Y|1|I|C|1961
8B7Y|1|I|5MC|1962
8B7Y|1|I|U|1963
8B7Y|1|I|G|1964
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- Small subunit ribosomal RNA; SSU rRNA
- Chain K
- 50S ribosomal protein L2
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