IL_8B7Y_183

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8B7Y|1|I|U|846, 8B7Y|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_183 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2569

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8B7Y|1|I|A|844
8B7Y|1|I|A|845
8B7Y|1|I|U|846
8B7Y|1|I|U|847
8B7Y|1|I|C|848
*
8B7Y|1|I|G|930
8B7Y|1|I|U|931
8B7Y|1|I|U|932
8B7Y|1|I|A|933
8B7Y|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L30