IL_8B7Y_195

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

8B7Y|1|I|U|2111, 8B7Y|1|I|G|2115, 8B7Y|1|I|G|2116, 8B7Y|1|I|A|2117, 8B7Y|1|I|U|2118, 8B7Y|1|I|A|2119, 8B7Y|1|I|U|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_195 not in the Motif Atlas

Homologous match to IL_5J7L_328

Geometric discrepancy: 0.4062

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8B7Y|1|I|G|2107
8B7Y|1|I|A|2108
8B7Y|1|I|U|2109
8B7Y|1|I|G|2110
8B7Y|1|I|U|2111
8B7Y|1|I|G|2112
8B7Y|1|I|U|2113
8B7Y|1|I|A|2114
8B7Y|1|I|G|2115
8B7Y|1|I|G|2116
8B7Y|1|I|A|2117
8B7Y|1|I|U|2118
8B7Y|1|I|A|2119
8B7Y|1|I|G|2120
8B7Y|1|I|G|2121
8B7Y|1|I|U|2122
8B7Y|1|I|G|2123
*
8B7Y|1|I|C|2175
8B7Y|1|I|A|2176
8B7Y|1|I|C|2177
8B7Y|1|I|C|2178
8B7Y|1|I|C|2179
8B7Y|1|I|U|2180
8B7Y|1|I|U|2181
8B7Y|1|I|U|2182

Current chains

Chain I

23S ribosomal RNA

Nearby chains