IL_8BF7_001
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BF7_001 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.1177
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BF7|1|0|G|24
8BF7|1|0|U|25
8BF7|1|0|G|26
8BF7|1|0|G|27
8BF7|1|0|A|28
8BF7|1|0|U|29
8BF7|1|0|G|30
*
8BF7|1|0|C|510
8BF7|1|0|U|511
8BF7|1|0|G|512
8BF7|1|0|A|513
8BF7|1|0|A|514
8BF7|1|0|A|515
8BF7|1|0|C|516
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
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