IL_8BF7_053

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_053 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3984

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8BF7|1|0|G|1473
8BF7|1|0|U|1474
8BF7|1|0|G|1475
8BF7|1|0|U|1476
8BF7|1|0|A|1477
8BF7|1|0|G|1478
*
8BF7|1|0|U|1513
8BF7|1|0|G|1514
8BF7|1|0|A|1515
8BF7|1|0|G|1516
8BF7|1|0|G|1517
8BF7|1|0|C|1518

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains