IL_8BF7_060

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8BF7|1|0|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_060 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1192

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|A|1669
8BF7|1|0|C|1670
8BF7|1|0|U|1671
8BF7|1|0|A|1672
8BF7|1|0|G|1673
8BF7|1|0|G|1674
*
8BF7|1|0|C|1990
8BF7|1|0|U|1991
8BF7|1|0|G|1992
8BF7|1|0|U|1993

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14