3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
8BF7|1|0|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BF7_061 not in the Motif Atlas
Geometric match to IL_5J7L_308
Geometric discrepancy: 0.1159
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8BF7|1|0|C|1686
8BF7|1|0|G|1687
8BF7|1|0|U|1688
8BF7|1|0|A|1689
8BF7|1|0|A|1690
8BF7|1|0|C|1691
*
8BF7|1|0|G|1696
8BF7|1|0|G|1697
8BF7|1|0|A|1698
8BF7|1|0|G|1699
8BF7|1|0|A|1700
8BF7|1|0|A|1701
8BF7|1|0|G|1702

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain A
50S ribosomal protein L2

Coloring options:


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