IL_8BF7_062

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8BF7|1|0|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_062 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1432

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BF7|1|0|U|1712
8BF7|1|0|A|1713
8BF7|1|0|U|1714
8BF7|1|0|G|1715
8BF7|1|0|U|1716
8BF7|1|0|A|1717
8BF7|1|0|G|1718
*
8BF7|1|0|U|1742
8BF7|1|0|G|1743
8BF7|1|0|A|1744
8BF7|1|0|A|1745
8BF7|1|0|A|1746

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains