3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
8BF7|1|0|U|1714
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BF7_062 not in the Motif Atlas
Homologous match to IL_5J7L_309
Geometric discrepancy: 0.1432
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8BF7|1|0|U|1712
8BF7|1|0|A|1713
8BF7|1|0|U|1714
8BF7|1|0|G|1715
8BF7|1|0|U|1716
8BF7|1|0|A|1717
8BF7|1|0|G|1718
*
8BF7|1|0|U|1742
8BF7|1|0|G|1743
8BF7|1|0|A|1744
8BF7|1|0|A|1745
8BF7|1|0|A|1746

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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