IL_8BF7_085

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_085 not in the Motif Atlas

Homologous match to IL_4WF9_089

Geometric discrepancy: 0.2045

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8BF7|1|0|A|2453
8BF7|1|0|G|2454
*
8BF7|1|0|C|2498
8BF7|1|0|C|2499
8BF7|1|0|U|2500

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

fMet-Lys dipeptide

Chain B

50S ribosomal protein L3