IL_8BF7_090

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGG*CUGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_090 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.2194

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8BF7|1|0|C|2507
8BF7|1|0|G|2508
8BF7|1|0|G|2509
*
8BF7|1|0|C|2579
8BF7|1|0|U|2580
8BF7|1|0|G|2581
8BF7|1|0|G|2582

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

fMet-Lys dipeptide

Chain B

50S ribosomal protein L3