IL_8BF7_183

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BF7_183 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1005

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8BF7|1|0|G|1666
8BF7|1|0|G|1667
8BF7|1|0|A|1668
8BF7|1|0|A|1669
8BF7|1|0|C|1670
8BF7|1|0|U|1671
8BF7|1|0|A|1672
8BF7|1|0|G|1673
8BF7|1|0|G|1674
*
8BF7|1|0|C|1990
8BF7|1|0|U|1991
8BF7|1|0|G|1992
8BF7|1|0|U|1993
8BF7|1|0|C|1994

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14