3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
AGGC*GCACCU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BF7|1|0|A|2453
8BF7|1|0|G|2454
8BF7|1|0|G|2455
8BF7|1|0|C|2456
*
8BF7|1|0|G|2495
8BF7|1|0|C|2496
8BF7|1|0|A|2497
8BF7|1|0|C|2498
8BF7|1|0|C|2499
8BF7|1|0|U|2500

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain 6
fMet-Lys dipeptide
Chain B
50S ribosomal protein L3
Chain J
50S ribosomal protein L16

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5188 s
Application loaded.