IL_8BF7_199

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAGU*AAUGUGCCUUCGGGAAC

Length

22 nucleotides

Bulged bases

8BF7|1|2|G|1024, 8BF7|1|2|C|1028, 8BF7|1|2|U|1030, 8BF7|1|2|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|2|G|1003
8BF7|1|2|A|1004
8BF7|1|2|A|1005
8BF7|1|2|G|1006
8BF7|1|2|U|1007
*
8BF7|1|2|A|1021
8BF7|1|2|A|1022
8BF7|1|2|U|1023
8BF7|1|2|G|1024
8BF7|1|2|U|1025
8BF7|1|2|G|1026
8BF7|1|2|C|1027
8BF7|1|2|C|1028
8BF7|1|2|U|1029
8BF7|1|2|U|1030
8BF7|1|2|C|1031
8BF7|1|2|G|1032
8BF7|1|2|G|1033
8BF7|1|2|G|1034
8BF7|1|2|A|1035
8BF7|1|2|A|1036
8BF7|1|2|C|1037

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14