IL_8BGE_006

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1066

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BGE|1|0|G|188
8BGE|1|0|G|189
8BGE|1|0|A|190
8BGE|1|0|A|191
8BGE|1|0|C|192
8BGE|1|0|U|193
8BGE|1|0|G|194
*
8BGE|1|0|C|201
8BGE|1|0|U|202
8BGE|1|0|A|203
8BGE|1|0|A|204
8BGE|1|0|G|205
8BGE|1|0|U|206
8BGE|1|0|A|207
8BGE|1|0|C|208

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28