IL_8BGE_092

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8BGE|1|0|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_092 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1305

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

8BGE|1|0|U|2522
8BGE|1|0|G|2523
*
8BGE|1|0|C|2540
8BGE|1|0|A|2541
8BGE|1|0|A|2542
8BGE|1|0|G|2543

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36