IL_8BGE_129

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1247

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BGE|1|2|U|409
8BGE|1|2|G|410
8BGE|1|2|A|411
8BGE|1|2|A|412
8BGE|1|2|G|413
8BGE|1|2|A|414
8BGE|1|2|A|415
8BGE|1|2|G|416
*
8BGE|1|2|U|427
8BGE|1|2|G|428
8BGE|1|2|U|429
8BGE|1|2|A|430
8BGE|1|2|A|431
8BGE|1|2|A|432
8BGE|1|2|G|433

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4