IL_8BGE_176

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8BGE|1|0|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGE_176 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.1904

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8BGE|1|0|A|844
8BGE|1|0|A|845
8BGE|1|0|U|846
8BGE|1|0|U|847
8BGE|1|0|C|848
*
8BGE|1|0|G|930
8BGE|1|0|U|931
8BGE|1|0|U|932
8BGE|1|0|A|933
8BGE|1|0|U|934

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain W

50S ribosomal protein L30