IL_8BGE_178
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8BGE|1|0|A|1127, 8BGE|1|0|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BGE_178 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.1425
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8BGE|1|0|G|1024
8BGE|1|0|G|1025
8BGE|1|0|G|1026
8BGE|1|0|A|1027
8BGE|1|0|A|1028
8BGE|1|0|A|1029
8BGE|1|0|C|1030
*
8BGE|1|0|G|1124
8BGE|1|0|G|1125
8BGE|1|0|A|1126
8BGE|1|0|A|1127
8BGE|1|0|G|1128
8BGE|1|0|A|1129
8BGE|1|0|U|1130
8BGE|1|0|G|1131
8BGE|1|0|U|1132
8BGE|1|0|A|1133
8BGE|1|0|A|1134
8BGE|1|0|C|1135
8BGE|1|0|G|1136
8BGE|1|0|G|1137
8BGE|1|0|G|1138
8BGE|1|0|G|1139
8BGE|1|0|C|1140
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain e
- 50S ribosomal protein L36
Coloring options: