IL_8BGE_183
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BGE_183 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1282
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8BGE|1|2|A|673
8BGE|1|2|G|674
8BGE|1|2|A|675
8BGE|1|2|A|676
8BGE|1|2|U|677
*
8BGE|1|2|G|713
8BGE|1|2|G|714
8BGE|1|2|A|715
8BGE|1|2|A|716
8BGE|1|2|U|717
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain j
- 30S ribosomal protein S6
- Chain o
- 30S ribosomal protein S11
- Chain v
- 30S ribosomal protein S18
- Chain y
- 30S ribosomal protein S21
Coloring options: