IL_8BGH_001

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_001 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.1184

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BGH|1|0|G|24
8BGH|1|0|U|25
8BGH|1|0|G|26
8BGH|1|0|G|27
8BGH|1|0|A|28
8BGH|1|0|U|29
8BGH|1|0|G|30
*
8BGH|1|0|C|510
8BGH|1|0|U|511
8BGH|1|0|G|512
8BGH|1|0|A|513
8BGH|1|0|A|514
8BGH|1|0|A|515
8BGH|1|0|C|516

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32