IL_8BGH_009

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3412

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8BGH|1|0|C|274
8BGH|1|0|C|275
8BGH|1|0|U|276
8BGH|1|0|G|277
8BGH|1|0|A|278
8BGH|1|0|A|279
8BGH|1|0|U|280
8BGH|1|0|C|281
*
8BGH|1|0|G|359
8BGH|1|0|U|360
8BGH|1|0|G|361
8BGH|1|0|A|362
8BGH|1|0|G|363

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains