IL_8BGH_020

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_020 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.0846

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8BGH|1|0|U|703
8BGH|1|0|G|704
8BGH|1|0|A|705
8BGH|1|0|A|706
8BGH|1|0|G|707
*
8BGH|1|0|U|724
8BGH|1|0|G|725
8BGH|1|0|G|726
8BGH|1|0|A|727
8BGH|1|0|G|728

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain A

50S ribosomal protein L2