IL_8BGH_044

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8BGH|1|0|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_044 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1636

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8BGH|1|0|G|1202
8BGH|1|0|U|1203
8BGH|1|0|A|1204
8BGH|1|0|A|1205
8BGH|1|0|G|1206
*
8BGH|1|0|U|1240
8BGH|1|0|A|1241
8BGH|1|0|U|1242
8BGH|1|0|C|1243

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15