IL_8BGH_094

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_094 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1433

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8BGH|1|0|C|2466
8BGH|1|0|C|2467
8BGH|1|0|A|2468
8BGH|1|0|A|2469
8BGH|1|0|G|2470
*
8BGH|1|0|C|2480
8BGH|1|0|G|2481
8BGH|1|0|A|2482
8BGH|1|0|C|2483
8BGH|1|0|G|2484

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain e

50S ribosomal protein L36