IL_8BGH_135

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_135 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1303

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BGH|1|2|U|409
8BGH|1|2|G|410
8BGH|1|2|A|411
8BGH|1|2|A|412
8BGH|1|2|G|413
8BGH|1|2|A|414
8BGH|1|2|A|415
8BGH|1|2|G|416
*
8BGH|1|2|U|427
8BGH|1|2|G|428
8BGH|1|2|U|429
8BGH|1|2|A|430
8BGH|1|2|A|431
8BGH|1|2|A|432
8BGH|1|2|G|433

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4