3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BGH_172 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.1548
The information below is about IL_5J7L_056
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8BGH|1|2|C|1259
8BGH|1|2|G|1260
8BGH|1|2|A|1261
8BGH|1|2|C|1262
8BGH|1|2|C|1263
*
8BGH|1|2|G|1272
8BGH|1|2|C|1273
8BGH|1|2|A|1274
8BGH|1|2|A|1275
8BGH|1|2|G|1276

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain r
30S ribosomal protein S14
Chain w
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1838 s