IL_8BGH_188

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_188 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1149

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8BGH|1|0|G|1666
8BGH|1|0|G|1667
8BGH|1|0|A|1668
8BGH|1|0|A|1669
8BGH|1|0|C|1670
8BGH|1|0|U|1671
8BGH|1|0|A|1672
8BGH|1|0|G|1673
8BGH|1|0|G|1674
*
8BGH|1|0|C|1990
8BGH|1|0|U|1991
8BGH|1|0|G|1992
8BGH|1|0|U|1993
8BGH|1|0|C|1994

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14