IL_8BGH_195

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_195 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.2084

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8BGH|1|2|U|593
8BGH|1|2|U|594
8BGH|1|2|A|595
8BGH|1|2|A|596
*
8BGH|1|2|U|644
8BGH|1|2|G|645
8BGH|1|2|G|646

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain l

30S ribosomal protein S8

Chain u

30S ribosomal protein S17