IL_8BH4_009

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2745

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8BH4|1|0|C|274
8BH4|1|0|C|275
8BH4|1|0|U|276
8BH4|1|0|G|277
8BH4|1|0|A|278
8BH4|1|0|A|279
8BH4|1|0|U|280
8BH4|1|0|C|281
*
8BH4|1|0|G|359
8BH4|1|0|U|360
8BH4|1|0|G|361
8BH4|1|0|A|362
8BH4|1|0|G|363

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains