IL_8BH4_036

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8BH4|1|0|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_036 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0937

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8BH4|1|0|U|1018
8BH4|1|0|U|1019
8BH4|1|0|A|1020
8BH4|1|0|A|1021
8BH4|1|0|G|1022
8BH4|1|0|U|1023
8BH4|1|0|G|1024
*
8BH4|1|0|C|1140
8BH4|1|0|U|1141
8BH4|1|0|A|1142
8BH4|1|0|A|1143
8BH4|1|0|A|1144

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36