3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_059 not in the Motif Atlas
Homologous match to IL_4WF9_064
Geometric discrepancy: 0.0943
The information below is about IL_4WF9_064
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

8BH4|1|0|G|1666
8BH4|1|0|G|1667
8BH4|1|0|A|1668
8BH4|1|0|A|1669
*
8BH4|1|0|U|1993
8BH4|1|0|C|1994

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L14

Coloring options:


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