3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
ACG*CUAU
Length
7 nucleotides
Bulged bases
8BH4|1|0|C|2055, 8BH4|1|0|U|2613, 8BH4|1|0|A|2614
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_075 not in the Motif Atlas
Homologous match to IL_5J7L_321
Geometric discrepancy: 0.2075
The information below is about IL_5J7L_321
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83389.2
Basepair signature
cWW-cWW
Number of instances in this motif group
5

Unit IDs

8BH4|1|0|A|2054
8BH4|1|0|C|2055
8BH4|1|0|G|2056
*
8BH4|1|0|C|2612
8BH4|1|0|U|2613
8BH4|1|0|A|2614
8BH4|1|0|U|2615

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32

Coloring options:


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