3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CAU*GUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_156 not in the Motif Atlas
Geometric match to IL_4V9F_023
Geometric discrepancy: 0.2141
The information below is about IL_4V9F_023
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8BH4|1|2|C|948
8BH4|1|2|A|949
8BH4|1|2|U|950
*
8BH4|1|2|G|1231
8BH4|1|2|U|1232
8BH4|1|2|G|1233

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain m
30S ribosomal protein S9
Chain q
30S ribosomal protein S13

Coloring options:


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