IL_8BH4_171

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_171 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1884

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BH4|1|2|C|1259
8BH4|1|2|G|1260
8BH4|1|2|A|1261
8BH4|1|2|C|1262
8BH4|1|2|C|1263
*
8BH4|1|2|G|1272
8BH4|1|2|C|1273
8BH4|1|2|A|1274
8BH4|1|2|A|1275
8BH4|1|2|G|1276

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14