3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHJ_009 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.3258
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

8BHJ|1|0|C|274
8BHJ|1|0|C|275
8BHJ|1|0|U|276
8BHJ|1|0|G|277
8BHJ|1|0|A|278
8BHJ|1|0|A|279
8BHJ|1|0|U|280
8BHJ|1|0|C|281
*
8BHJ|1|0|G|359
8BHJ|1|0|U|360
8BHJ|1|0|G|361
8BHJ|1|0|A|362
8BHJ|1|0|G|363

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

No other chains within 10Å

Coloring options:


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