IL_8BHJ_042

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_042 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1148

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BHJ|1|0|A|1262
8BHJ|1|0|U|1263
8BHJ|1|0|A|1264
8BHJ|1|0|A|1265
8BHJ|1|0|G|1266
8BHJ|1|0|U|1267
8BHJ|1|0|A|1268
8BHJ|1|0|A|1269
*
8BHJ|1|0|U|2011
8BHJ|1|0|G|2012
8BHJ|1|0|A|2013
8BHJ|1|0|A|2014
8BHJ|1|0|A|2015
8BHJ|1|0|U|2016
8BHJ|1|0|U|2017

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32