IL_8BHJ_062

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8BHJ|1|0|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_062 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1589

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHJ|1|0|U|1712
8BHJ|1|0|A|1713
8BHJ|1|0|U|1714
8BHJ|1|0|G|1715
8BHJ|1|0|U|1716
8BHJ|1|0|A|1717
8BHJ|1|0|G|1718
*
8BHJ|1|0|U|1742
8BHJ|1|0|G|1743
8BHJ|1|0|A|1744
8BHJ|1|0|A|1745
8BHJ|1|0|A|1746

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains